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DNA
Extraction Under Ultra-Clean Conditions
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MicroAnalytica
has the world's first facility dedicated to the commercial extraction of
paleoDNA for the research community. Commercial samples are the sole
priority of the facility and are given the undivided attention of professional
technicians. No students or interns are used in the extractions. Samples
are started immediately upon receipt.
Extraction
services are presently limited to mammalian bone. However, we plan to
swiftly expand into other material types as research demand requires. Two
extraction services are available.
Note:
All samples must be discussed prior to submittal. Please
call (1) 305-479-1259 or email dhood@paleoDNA.com
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1.
SUPPORT EXTRACTION SERVICE: Extraction of paleoDNA
for researchers who have their own PCR and sequencing resources or other collaborations.
This
service is especially useful to existing paleoDNA labs and to researchers with
on-going paleoDNA research. This service provides both for INDEPENDENT
VERIFICATION AND INCREASED THROUGHPUT.
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extractions are performed under our 8-tier protocol.
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extracts are provided within 30 days, regardless of volume.
- negative controls are provided with the samples.
2.
RESEARCH EXTRACTION SERVICE: Extraction
services associated with paleoDNA research solutions. Extraction
is provided in association with complete research
solutions.
ANALYSIS
USING AN 7 TIER ENVIRONMENTAL CONTROL PROCESS
1.
NEGATIVE PRESSURE AIR-LOCK FACILITY.
Samples
are first taken into a negative pressure air-lock facility that also serves as
the only entrance to the extraction laboratory. This facility is
constantly being exhausted, creating negative pressure at the DNA lab doorway.
This ensures DNA containing air does not enter the extraction lab.
2.
CLEAN ROOM APPAREL WORN BY TECHNICIANS
Once
in the air-lock facility, the technician then dresses in a self-containing
clean-room suit to eliminate operator contamination.
3.
GLASS EXHAUST CHAMBER: INITIAL OPENING AND EXAMINATION OF THE SAMPLE
Samples
are opened and examined in a glass exhaust chamber that is sterilized in
between each sample. The exhaust system removes dust and contaminating DNA
associated with previous sample handling, wrapping, and matrix material.
4.
SEALED SAMPLE ANALYSIS CONTAINERS
Sub-samples
are then taken for the analysis and individually placed into sealable sterile
tubes that serve as contamination free micro-environments for the samples.
5.
CLEAN ROOM FACILITY
The
surfaces of the sample tubes are sterilized with bleach, the operator is sponged
with a bleach solution, and the sub-samples are then taken into a clean room
facility with isolating environmental controls. The clean room is
germicidally irradiated and has its own air conditioning system. The
clean room serves as a "buffer-zone" with highly controlled
environmental conditions that minimize the presence of any DNA in the air or
physical surfaces.
6.
ISOLATION CHAMBER
Since
there has been movement in-and-out of the clean room, a final precaution is
followed while handling the actual sample. Sample containers are only
opened inside an ULPA filtered (ultra-HEPA), ultra-high intensity irradiated
positive pressure air chamber. This ensures the absence of air-born DNA
contamination while a sample container is opened. Only one sample is ever opened
at one time.
7.
DNA free chemical verification
Prior
to adding any chemicals (or even water) to a sample, batches of solutions are
verified for DNA purity.
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